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Chromosome Fore!mat Mystery Cache

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Fore!: Another muggling.
Thanks for the memories!
My thanks to allrounder who has done so much maintenance for me.
Caching just simply wouldn’t be the same without her!

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Hidden : 7/30/2009
Difficulty:
3.5 out of 5
Terrain:
2 out of 5

Size: Size:   small (small)

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Geocache Description:

The cache is not at the above coordinates. It can be found at S35 11.WX1 E149 08.YZ5

The fore!mat of genes on a chromosomes – called a chromosome map - can be determined by analysing how often the genes recombine away from the parental genotypes to produce new combinations in the offspring. Your task is to determine the chromosome map for 5 genes, A, B, C, D, E.

 

Example of how to do it:

 

Consider two genes, Q and R.

All parents have two copies of each gene (because they are diploid)

 

Parent type 1 has the genotype of Qq and Rr (therefore called “heterozygous” for these traits) and Parent type 2 has the genotype of qq and rr (therefore called “homozygous recessive” for both traits)

 

If parents with type 1 are crossed with parents of type 2 and the following offspring are produced:

 

QqRr = 78 offspring

qqrr = 42 offspring

Qqrr = 12 offspring

qqRr = 6 offspring

 

You will notice that the first two are the same as the parents and the second two are different from the parents. These second two types are known as “recombinant types”.

 

In this example there are 18 recombinants out of a total of 138 offspring.

This can be converted to a “cross over value” through the simple formula:

 

Cross over value = number of recombinant types/total number of offspring x 100

 

So in this case the cross over value for Q and R is 18/138x100

Hence the cross over value equals approximately 13%

 

This means that you can then say that genes Q and R are 13 map units away from each other on a chromosome. This could look like the following picture, but technically the Q and R could be anywhere, so long as they are separated by 13 points:

 

 

Now imagine we found another gene, “S”

If we look at its recombination with “R” and find that it is 6, then there would be two possible positions for “S”, as shown below.

 

 

 

 

 

What we would need to know, is the cross over value between S and Q. If it equals 7, then the map is:

 

 

but if the cross over value between S and Q equals 19 then the correct map would be:

 

 

 

 

Now, for you to solve:

 

There are 5 genes to consider: A, B, C, D and E.

 

Cross over between A and B - Parents AaBb crossed with aabb produce:

120 AaBb

171 aabb

5 Aabb

4 aaBb

 

Cross over between A and C - Parents AaCc crossed with aacc produce:

84 AaCc

108 aacc

6 Aacc

2 aaCc

 

Cross over between A and D - Parents AaDd crossed with aadd produce:

44 AaDd

45 aadd

1 Aadd

0 aaDd

 

Cross over between D and E - Parents DdEe crossed with ddee produce:

128 DdEe

160 ddee

4 Ddee

8 ddEe

 

Cross over between C and D - Parents CcDd crossed with ccdd produce:

165 CcDd

120 ccdd

5 Ccdd

10 ccDd

 

Cross over between B and E - Parents BbEe crossed with bbee produce:

224 BbEe

168 bbee

5 Bbee

3 bbEe

 

 

Hints:

1)      Determine the cross over value (recombination percentage) for each reported group

2)      Draw them on a chromosome map

 

 

The cache can be found at S35 11.WX1, E149 08.YZ5

 

Where:

W = the cross over value between A and E

X = the cross over value between B and D

Y = the cross over value between B and C

Z = the cross over value between C and E

 

 

 

 

 

 

 

 

 

 

Additional Hints (No hints available.)